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MeV sequences were downloaded from GenBank and aligned using ClustalW. Additional file 1 includes a list of accession numbers for sequences used in this study. Sequences of the hemagglutinin (H) and nucleocapsid (N) genes collected worldwide between 1954 and 2009 were used. The H and N genes were selected for analyses since their sequences are registered commonly. Sequences associated with the persistent disease manifestation SSPE were removed because these were expected to exhibit different evolutionary dynamics [18]. To avoid weighting specific outbreaks, we also excluded sequences that had been collected at the same time and place and that were genetically similar to each other. Consequently, the final data sets comprised 149 taxa with an alignment length of 1830 bp for the H gene and 66 taxa with an alignment length of 1578 bp for the N gene.

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